Digital Specimen Core Resources
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Digital Specimen Resources
This page contains an assortment of resources to help explain the structure and relationship of the Digital Media object.
Diagrams
Class Diagrams
classDiagram class DigitalSpecimen { dcterms:identifier : string ods:version : integer ods:status : string dcterms:modified : string dcterms:created : string ods:fdoType : string ods:midsLevel : integer ods:normalisedPhysicalSpecimenID : string ods:physicalSpecimenID : string ods:physicalSpecimenIDType : string ods:isKnownToContainMedia : boolean ods:sourceSystemID : string ods:sourceSystemName : string ods:metadataLanguages : array<string> dcterms:license : string dwc:basisOfRecord : string ods:organisationCode : string ods:organisationID : string ods:organisationName : string dwc:collectionCode : string dwc:collectionID : string ods:topicOrigin : string ods:topicDomain : string ods:topicDiscipline : string ods:topicCategory : string ods:specimenName : string dwc:informationWithheld : string dwc:preparations : string dwc:disposition : string ods:isMarkedAsType : boolean dwc:dataGeneralizations : string ods:ownerOrganisationCode : string dwc:datasetName : string dwc:datasetID : string dcterms:accessRights : string dcterms:rightsHolder : string dwc:organismID : string dwc:organismName : string dwc:organismScope : string dwc:organismRemarks : string dwc:organismQuantity : string dwc:organismQuantityType : string dwc:dynamicProperties : string ods:hasSpecimenParts : array<ods:SpecimenPart> ods:hasAssertions : array<ods:Assertion> ods:hasEntityRelationships : array<ods:EntityRelationship> ods:hasIdentifications : array<ods:Identification> ods:hasIdentifiers : array<ods:Identifier> ods:hasCitations : array<ods:Citation> ods:hasAgents : array<ods:Agent> ods:hasEvents : array<ods:Event> ods:hasTombstoneMetadata : object } class SpecimenPart { dwc:materialEntityID : string dwc:recordNumber : string dwc:preparations : string ods:isMarkedAsType : boolean ods:topicOrigin : string ods:topicDomain : string ods:topicDiscipline : string ods:topicCategory : string ods:specimenName : string dwc:organismID : string dwc:organismName : string dwc:organismScope : string dwc:organismRemarks : string dwc:organismQuantity : string dwc:organismQuantityType : string ods:hasIdentifications : array<ods:Identification> ods:hasAssertions : array<ods:Assertion> ods:hasIdentifiers : array<ods:Identifier> ods:hasEvents : array<ods:Event> ods:hasAgents : array<ods:Agent> ods:hasChronometricAges : array<ods:ChronometricAge> } class Identification { dwc:identificationID : string ods:identificationType : string dwc:verbatimIdentification : string dwc:typeStatus : string dwc:dateIdentified : string ods:isVerifiedIdentification : boolean dwc:identificationRemarks : string dwc:identificationQualifier : string ods:hasAgents : array<ods:Agent> ods:hasCitations : array<ods:Citation> ods:hasTaxonIdentifications : array<ods:TaxonIdentification> } class Event { dwc:behavior : string dwc:sex : string dwc:lifeStage : string dwc:reproductiveCondition : string dwc:caste : string dwc:vitality : string dwc:establishmentMeans : string dwc:pathway : string dwc:degreeOfEstablishment : string dwc:georeferenceVerificationStatus : string dwc:fieldNumber : string dwc:eventType : string dwc:eventDate : string dwc:eventTime : string dwc:endDayOfYear : integer dwc:startDayOfYear : integer dwc:verbatimEventDate : string dwc:year : integer dwc:month : integer dwc:day : integer dwc:habitat : string eco:protocolDescriptions : string dwc:sampleSizeValue : number dwc:sampleSizeUnit : string dwc:samplingProtocol : string dwc:samplingEffort : string dwc:fieldNotes : string dwc:eventRemarks : string ods:hasAssertions : array<ods:Assertion> ods:hasLocation : object } class Location { dwc:locationID : string dwc:continent : string dwc:waterBody : string dwc:islandGroup : string dwc:island : string dwc:country : string dwc:countryCode : string dwc:stateProvince : string dwc:county : string dwc:municipality : string dwc:locality : string dwc:verbatimLocality : string dwc:minimumElevationInMeters : number dwc:higherGeographyID : string dwc:higherGeography : string dwc:maximumElevationInMeters : number dwc:verbatimElevation : string dwc:minimumDistanceAboveSurfaceInMeters : number dwc:maximumDistanceAboveSurfaceInMeters : number dwc:minimumDepthInMeters : number dwc:maximumDepthInMeters : number dwc:verbatimDepth : string dwc:verticalDatum : string dwc:locationAccordingTo : string dwc:locationRemarks : string ods:hasGeoreference : object ods:hasGeologicalContext : object } class Agent { schema:identifier : string schema:name : string ods:hasRoles : array<ods:Role> schema:email : string schema:url : string ods:hasIdentifiers : array<ods:Identifier> } class Role { schema:roleName : string schema:startDate : string schema:endDate : string schema:position : integer } class Assertion { dwc:measurementID : string dwc:parentMeasurementID : string dwc:measurementType : string dwciri:measurementType : string dwc:measurementDeterminedDate : string dwc:measurementValue : string dwciri:measurementValue : string dwc:measurementAccuracy : string dwc:measurementUnit : string dwciri:measurementUnit : string dwc:measurementMethod : string dwciri:measurementMethod : string dwc:measurementRemarks : string ods:hasAgents : object ods:hasCitations : array<ods:Citation> } class Citation { dcterms:identifier : string dcterms:type : string dcterms:date : string dcterms:title : string ods:pageNumber : string dcterms:description : string dcterms:bibliographicCitation : string ods:isPeerReviewed : boolean ods:hasAgents : object } class EntityRelationship { dwc:relationshipOfResource : string dwc:relationshipOfResourceID : string dwc:relatedResourceID : string ods:relatedResourceURI : string dwc:relationshipEstablishedDate : string dwc:relationshipRemarks : string ods:hasAgents : object } class Identifier { dcterms:title : string dcterms:type : string dcterms:identifier : string dcterms:format : array<string> dcterms:subject : array<string> ods:isPartOfLabel : boolean ods:gupriLevel : string ods:identifierStatus : string } class ChronometricAge { chrono:chronometricAgeID : string chrono:verbatimChronometricAge : string chrono:uncalibratedChronometricAge : string chrono:chronometricAgeConversionProtocol : string chrono:earliestChronometricAge : integer chrono:earliestChronometricAgeReferenceSystem : string chrono:latestChronometricAge : integer chrono:latestChronometricAgeReferenceSystem : string chrono:chronometricAgeUncertaintyInYears : integer chrono:chronometricAgeUncertaintyMethod : string chrono:materialDated : string chrono:materialDatedID : string chrono:materialDatedRelationship : string chrono:chronometricAgeDeterminedDate : string chrono:chronometricAgeReferences : string chrono:chronometricAgeRemarks : string } class TombstoneMetadata { ods:tombstoneDate : string ods:tombstoneText : string ods:hasAgents : object ods:hasRelatedPIDs : array<ods:RelatedPID> } class RelatedPID { dcterms:identifier : string schema:identifier : string ods:relationshipType : string } class TaxonIdentification { dwc:taxonID : string dwc:scientificName : string dwc:scientificNameID : string ods:scientificNameHTMLLabel : string dwc:scientificNameAuthorship : string dwc:namePublishedInYear : string dwc:taxonRank : string dwc:verbatimTaxonRank : string dwc:taxonRemarks : string dwc:kingdom : string dwc:phylum : string dwc:class : string dwc:order : string dwc:family : string dwc:subfamily : string dwc:genus : string dwc:specificEpithet : string dwc:taxonomicStatus : string dwc:nomenclaturalCode : string dwc:vernacularName : string dwc:subgenus : string dwc:acceptedNameUsage : string dwc:acceptedNameUsageID : string dwc:cultivarEpithet : string dwc:genericName : string dwc:infragenericEpithet : string dwc:infraspecificEpithet : string dwc:nomenclaturalStatus : string dwc:originalNameUsage : string dwc:subtribe : string dwc:superfamily : string dwc:tribe : string } class GeologicalContext { dwc:earliestEonOrLowestEonothem : string dwc:latestEonOrHighestEonothem : string dwc:earliestEraOrLowestErathem : string dwc:latestEraOrHighestErathem : string dwc:earliestPeriodOrLowestSystem : string dwc:latestPeriodOrHighestSystem : string dwc:earliestEpochOrLowestSeries : string dwc:latestEpochOrHighestSeries : string dwc:earliestAgeOrLowestStage : string dwc:latestAgeOrHighestStage : string dwc:lowestBiostratigraphicZone : string dwc:highestBiostratigraphicZone : string dwc:lithostratigraphicTerms : string dwc:group : string dwc:formation : string dwc:member : string dwc:bed : string } class Georeference { dwc:verbatimCoordinates : string dwc:decimalLatitude : number dwc:verbatimLatitude : string dwc:decimalLongitude : number dwc:verbatimLongitude : string dwc:verbatimCoordinateSystem : string dwc:geodeticDatum : string dwc:coordinateUncertaintyInMeters : number dwc:coordinatePrecision : number dwc:pointRadiusSpatialFit : number dwc:footprintWKT : string dwc:footprintSRS : string dwc:verbatimSRS : string dwc:footprintSpatialFit : integer dwc:georeferencedDate : string dwc:georeferenceProtocol : string dwc:georeferenceSources : string dwc:georeferenceRemarks : string ods:hasAgents : array<ods:Agent> } DigitalSpecimen -- SpecimenPart DigitalSpecimen -- Identification DigitalSpecimen -- Event DigitalSpecimen -- Citation DigitalSpecimen -- Identifier DigitalSpecimen -- Assertion DigitalSpecimen -- Agent DigitalSpecimen -- EntityRelationship DigitalSpecimen -- ChronometricAge DigitalSpecimen -- TombstoneMetadata TombstoneMetadata -- Agent TombstoneMetadata -- RelatedPID Event -- Location Event -- Assertion Location -- Georeference Location -- GeologicalContext Agent -- Identifier Agent -- Role Identification -- Citation Citation -- Agent Identification -- Agent Identification -- TaxonIdentification Assertion -- Agent Assertion -- Citation Citation -- Agent EntityRelationship -- Agent Georeference -- Agent Agent -- Identifier SpecimenPart -- Identification SpecimenPart -- Assertion SpecimenPart -- Agent SpecimenPart -- ChronometricAge SpecimenPart -- Identifier SpecimenPart -- Event
Entity-Relationship Diagrams
erDiagram DigitalSpecimen ||--o{ SpecimenPart : Has DigitalSpecimen ||--o{ Identification : Has DigitalSpecimen ||--o{ Event : Has DigitalSpecimen ||--o{ Citation : Has DigitalSpecimen ||--|{ Identifier : Has DigitalSpecimen ||--o{ Assertion : Has DigitalSpecimen ||--o{ Agent : Has DigitalSpecimen ||--o{ EntityRelationship : Has DigitalSpecimen ||--o{ ChronometricAge : Has DigitalSpecimen ||--o| TombstoneMetadata : Has TombstoneMetadata ||--|{ Agent : Has TombstoneMetadata ||--o{ RelatedPID : Has Event ||--o| Location : Has Event ||--o{ Assertion : Has Location ||--o| Georeference : Has Location ||--o| GeologicalContext : Has Agent ||--o{ Identifier : Has Agent ||--|{ Role : Has Identification ||--o{ Citation : Has Citation ||--o{ Agent : Has Identification ||--o{ Agent : Has Identification ||--o{ TaxonIdentification : Has Assertion ||--o{ Agent : Has Assertion ||--o{ Citation : Has EntityRelationship ||--|{ Agent : Has Georeference ||--o{ Agent : Has SpecimenPart ||--o{ Identification : Has SpecimenPart ||--o{ Assertion : Has SpecimenPart ||--o{ Agent : Has SpecimenPart ||--o{ ChronometricAge : Has SpecimenPart ||--o{ Identifier : Has SpecimenPart ||--o{ Event : Has
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