Digital Specimen Core Resources (In Progress)
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Digital Specimen Resources (In Progress)
This page contains an assortment of resources to help explain the structure and relationship of the Digital Media object.
Diagrams
Class Diagrams
classDiagram class DigitalSpecimen { ID : string version : integer created : string type : string midsLevel : integer normalisedPhysicalSpecimenID : string physicalSpecimenID : string physicalSpecimenIDType : None topicOrigin : None topicDomain : None topicDiscipline : None isMarkedAsType : boolean isKnownToContainMedia : boolean specimenName : string sourceSystemID : string livingOrPreserved : None language : array license : string modified : string basisOfRecord : string preparations : string disposition : string institutionCode : string institutionID : string institutionName : string collectionCode : string collectionID : string informationWithheld : string dataGeneralizations : string ownerInstitutionCode : string recordedBy : string recordedByID : string datasetName : string datasetID : string accessRights : string rightsHolder : string verbatimLabel : string organismID : string organismName : string organismScope : string associatedOrganisms : string organismRemarks : string dynamicProperties : object hasMaterialEntity : array hasIdentification : array hasAssertion : array hasEvent : array hasEntityRelationship : array hasCitation : array hasIdentifier : array hasChronometricAge : array hasAgent : array } class MaterialEntity { materialEntityID : string materialEntityType : string preparations : string disposition : string institutionCode : string institutionID : string institutionName : string collectionCode : string collectionID : string ownerInstitutionCode : string recordedBy : string recordedByID : string verbatimLabel : string hasIdentification : array hasAssertion : array hasEntityRelationship : array hasCitation : array hasIdentifier : array hasEvent : array hasAgent : array } class Identification { identificationID : string identificationType : string taxonFormula : string verbatimIdentification : string typeStatus : string identifiedBy : string identifiedByID : string dateIdentified : string identificationReferences : string isVerifiedIdentification : boolean identificationRemarks : string identificationQualifier : string hasCitation : array hasTaxonIdentification : array } class TaxonIdentification { taxonID : string scientificName : string scientificNameID : string scientificNameHtmlLabel : string scientificNameAuthorship : string nameAccordingTo : string namePublishedInYear : string taxonRank : string verbatimTaxonRank : string taxonSource : string taxonRemarks : string kingdom : string phylum : string class : string order : string family : string subfamily : string genus : string specificEpithet : string taxonomicStatus : string nomenclaturalCode : string vernacularName : string subgenus : string acceptedNameUsage : string acceptedNameUsageID : string cultivarEpithet : string genericName : string infragenericEpithet : string infraspecificEpithet : string nomenclaturalStatus : string originalNameUsage : string subtribe : string superfamily : string tribe : string } class Event { organismQuantity : string organismQuantityType : string sex : string lifeStage : string reproductiveCondition : string behavior : string caste : string vitality : string establishmentMeans : string occurrenceStatus : None pathway : string degreeOfEstablishment : string georeferenceVerificationStatus : string occurrenceRemarks : string eventName : string fieldNumber : string recordNumber : string eventType : string eventDate : string eventTime : string endDayOfYear : integer startDayOfYear : integer verbatimEventDate : string year : integer month : integer day : integer habitat : string protocolDescriptions : string sampleSizeValue : number sampleSizeUnit : string samplingProtocol : string samplingEffort : string fieldNotes : string eventRemarks : string collectorName : string collectorID : string hasAssertion : array Location : object } class Location { locationID : string continent : string waterBody : string islandGroup : string island : string country : string countryCode : string stateProvince : string county : string municipality : string locality : string verbatimLocality : string minimumElevationInMeters : number higherGeographyID : string higherGeography : string maximumElevationInMeters : number verbatimElevation : string minimumDistanceAboveSurfaceInMeters : number maximumDistanceAboveSurfaceInMeters : number minimumDepthInMeters : number maximumDepthInMeters : number verbatimDepth : string verticalDatum : string locationAccordingTo : string locationRemarks : string } class GeoReference { verbatimCoordinates : string decimalLatitude : number verbatimLatitude : string decimalLongitude : number verbatimLongitude : string verbatimCoordinateSystem : string geodeticDatum : string coordinateUncertaintyInMeters : number coordinatePrecision : number pointRadiusSpatialFit : number footprintWKT : string footprintSRS : string verbatimSRS : string footprintSpatialFit : integer georeferencedBy : string georeferencedDate : string georeferenceProtocol : string georeferenceSources : string georeferenceRemarks : string } class GeologicalContext { earliestEonOrLowestEonothem : string latestEonOrHighestEonothem : string earliestEraOrLowestErathem : string latestEraOrHighestErathem : string earliestPeriodOrLowestSystem : string latestPeriodOrHighestSystem : string earliestEpochOrLowestSeries : string latestEpochOrHighestSeries : string earliestAgeOrLowestStage : string latestAgeOrHighestStage : string lowestBiostratigraphicZone : string highestBiostratigraphicZone : string lithostratigraphicTerms : string group : string formation : string member : string bed : string } class Agent { agentRole : string agentType : string agentID : string agentName : string agentRoleBegan : string agentRoleEnded : string agentRoleOrder : integer hasIdentifier : array } class Assertion { measurementID : string parentMeasurementID : string measurementType : string measurementType : string measurementDeterminedDate : string measurementValue : string measurementValue : string measurementAccuracy : string measurementUnit : string measurementUnit : string assertionByAgentName : string assertionByAgentID : string assertionProtocol : string assertionProtocolID : string assertionRemarks : string } class Citation { identifier : string type : string date : string title : string creator : string citationPageNumber : string citationRemarks : string referenceType : string bibliographicCitation : string referenceYear : integer referenceIRI : string isPeerReviewed : boolean } class EntityRelationship { relationshipOfResource : string relationshipOfResourceID : string relatedResourceID : string relatedResourceURI : string relationshipEstablishedDate : string entityRelationshipOrder : integer relationshipAccordingTo : string relationshipAccordingToID : string relationshipRemarks : string } class Identifier { title : string localTitle : string identifier : string format : string subject : string isPartOfLabel : boolean isBarcodeOrNFC : boolean isIDPersistent : boolean } class ChronometricAge { chronometricAgeID : string verbatimChronometricAge : string verbatimChronometricAgeProtocol : string uncalibratedChronometricAge : string chronometricAgeConversionProtocol : string earliestChronometricAge : integer earliestChronometricAgeReferenceSystem : string latestChronometricAge : integer latestChronometricAgeReferenceSystem : string chronometricAgeUncertaintyInYears : integer chronometricAgeUncertaintyMethod : string materialDated : string materialDatedID : string materialDatedRelationship : string chronometricAgeDeterminedBy : string chronometricAgeDeterminedDate : string chronometricAgeReferences : string chronometricAgeRemarks : string } DigitalSpecimen -- MaterialEntity DigitalSpecimen -- Identification DigitalSpecimen -- Event DigitalSpecimen -- Citation DigitalSpecimen -- Identifier DigitalSpecimen -- Assertion DigitalSpecimen -- Agent DigitalSpecimen -- EntityRelationship DigitalSpecimen -- ChronometricAge Event -- Location Event -- Assertion Location -- GeoReference Location -- GeologicalContext MaterialEntity -- Event MaterialEntity -- Citation MaterialEntity -- Identifier MaterialEntity -- EntityRelationship MaterialEntity -- Agent MaterialEntity -- Assertion MaterialEntity -- Identification Agent -- Identifier Identification -- Citation Identification -- TaxonIdentification
Entity-Relationship Diagrams
erDiagram DigitalSpecimen ||--o{ MaterialEntity : Has DigitalSpecimen ||--o{ Identification : Has DigitalSpecimen ||--o{ Event : Has DigitalSpecimen ||--o{ Citation : Has DigitalSpecimen ||--o{ Identifier : Has DigitalSpecimen ||--o{ Assertion : Has DigitalSpecimen ||--o{ Agent : Has DigitalSpecimen ||--o{ EntityRelationship : Has DigitalSpecimen ||--o{ ChronometricAge : Has Event ||--o| Location : Has Event ||--o{ Assertion : Has Location ||--o| GeoReference : Has Location ||--o| GeologicalContext : Has MaterialEntity ||--o{ Event : Has MaterialEntity ||--o{ Citation : Has MaterialEntity ||--o{ Identifier : Has MaterialEntity ||--o{ EntityRelationship : Has MaterialEntity ||--o{ Agent : Has MaterialEntity ||--o{ Assertion : Has MaterialEntity ||--o{ Identification : Has Agent ||--o{ Identifier : Has Identification ||--o{ Citation : Has Identification ||--o| TaxonIdentification : Has
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